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Flu vaccine: This is CDC Clinic Chief Nurse Lee Ann Jean-Louis extracting Influenza Virus Vaccine, Fluzone® from a 5 ml. vial.
Courtesy CDC/Jim Gathany
Did you know back in February scientist and medical professionals selected the influenza virus strains for the upcoming flu season? Now that it is July the pharmaceutical companies are well into manufacturing, purification and testing the vaccine. Meanwhile, it is winter and flu season in the southern hemisphere and the virus is busy mutating. The big question on everyone’s mind is will it mutate so much that the northern hemisphere vaccine will be ineffective?
I agree with Dr. Steven Salzberg remarks in his recent Nature commentary…
"The current system, in which most of the world’s vaccine supply is grown in chicken eggs, is an antiquated, inefficient method requiring six months or more to ramp up production, which in turn means that the vaccine strains must be chosen far in advance of each flu season. More crucially it sometimes prevents the use of the optimal strain, as it did in 2007."
Influenza (the flu) is a serious disease
Each year in the United States, on average:
Some vaccine problems in the past
In recent years the match between the vaccine viruses and those identified during the flu season has usually been good. In 16 of the last 20 U.S. influenza seasons, including the 2007-08 season, the viruses in the influenza vaccine have been well matched to the predominant circulating viruses. Since 1988, there has only been one season (1997-98) when there was very low cross-reaction between the viruses in the vaccine and the predominate circulating virus and three seasons (1992-93, 2003-04, and 2007-08) when there was low cross-reaction (CDC). So after last year’s miscalculation the committee picked three new strains for the vaccine this year. One is a current southern hemisphere vaccine virus which they expect will still be present next year. In addition, they predict a second new Type A strain, known as H1N1/Brisbane/59, to also hit, along with a newer Type B/Florida strain.
Dr. Salzberg feels last year’s miscalculation was a failure…
"The harm was thus twofold; people fell ill and their trust in the vaccine system was undermined. This failure could have been predicted, if not prevented, through a more open system of vaccine design, a stronger culture of sharing in the influenza research community and a serious commitment to new technologies for production. The habits of the vaccine community must change for the sake of public health."
He goes on to suggest…
"The process of choosing flu-vaccine strains needs to be much more open. Other scientists, such as those in evolutionary biology with expertise in sequence analysis, could meaningfully contribute to the selection. At present, external scientists cannot review the data that went into the decision, nor can they suggest other types of data that might improve it."
Even with all of these miscalculations, I still feel getting the vaccine is worth the risk. But that doesn’t mean the process shouldn’t be improved. So once again I will be vaccinated and I will make sure my family is too—but what can we do as citizens to improve this process? What will you do?
Popular Science magazine is running a series of items on scientific research projects that seem fairly pointless. They report on experiments that have proven that unathletic kids are unpopular; that rock musicians tend to die young; and that people catch the flu in winter.
Why bother? Two reasons. First, as Mark Twain is supposed to have said, “common sense is neither.” A lot of the things we think we know turn out not to be true. Only by checking them out do we really know what’s what.
Second, confirming a phenomenon exists is the first step toward understanding it. If we want to combat the flu, for instance, it helps to know that, yes, it really does strike more often during a particular time of the year. This may be a clue to how the disease spreads, and how we might be able to stop it.
Sometimes, having an amazing grasp of the obvious can be a good thing!
Do you have a fever and headache? Is your nose running, with a sore throat and dry cough? Are you tired with muscle aches? You might have influenza or “the flu” as we commonly call it. You may have gotten vaccinated and you still got a bad case of the flu. This is one of those influenza seasons where the experts didn’t quite get it right.
So what happened?
Influenza virus is constantly changing and evolving and each year public health experts get together several months in advance (the FDA will make their recommendation for next year’s vaccine on February 21, 2008) of the flu season to choose three strains of influenza to put in the vaccine, H1N1 strain, H3N2 strain and a B virus strain. It is part science and part art. For more information on this process try your hand at predicting the flu using a program developed as part of the Disease Detective exhibition currently at the Science Museum of Minnesota.
According to Dr. Joe Bresee, the Branch Chief, in the branch of Epidemiology and Prevention of the CDC’s Influenza Division, the H1N1 strain in the vaccine this year is a good match to the circulating strain but the H3N2 type strain and the B strain are not ideal matches. So protection is probably lower than expected in a season when vaccine strains and circulating strains are well matched. Usually, the guesswork is pretty good: Bresee has said, the vaccines have been a good match in 16 of the last 19 flu seasons.
Why are people so sick this year?
It just so happens – and we don’t know why – that H3N2 strains of influenza virus are more severe. For this season the number of people infected with H3N2 influenza is on the rise. The past two years the H1N1 strain predominated and so those infected were not as sick.
What are all these H’s and N’s?
Influenza is categorized as influenza A type viruses and influenza B type viruses. The A viruses are further broken down and characterized by the proteins found on the surface of the virus. These proteins are called hemagglutinin (H) and neuraminidase (N). The proteins change as the influenza virus evolves so numbers are used to designate the different types of H and N proteins.
Remember vaccination is still your best defense against influenza. The experts have been right 16 of the past 19 seasons and as Dr. Bresee reports…
But even in those years where the vaccine matches less well against the circulating strains, we know that getting vaccinated will tend to make the illnesses milder, lessen the chances a person has a very severe outcome.
Officials from the World Health Organization are visiting Pakistan to investigate several cases of bird flu in humans. The disease, which is very similar to human influenza, has not yet been shown to be contagious -- you can catch it from birds, but not from another person. If it ever mutates into a form that can be transmitted person-to-person, that could have very dire consequences -- people have no immunity to the disease, and there is no vaccine yet.
The government has released its plan for fighting the bird flu and other global pandemics.
Indonesia—with the world's highest death toll from H5N1 avian influenza—briefly stopped providing samples to the World Health Organization (WHO), saying only organizations that agreed not to use the samples for commercial purposes would have access. Now the Indonesian government has struck a new deal to share samples under a plan that would guarantee access to any resulting vaccines.
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H5N1 avian influenza viruses: This is a colorized transmission electron micrograph of Avian influenza A H5N1 viruses (in gold). (Courtesy J. Katz Goldsmith and S. Zaki, CDC)
The Reuters article says,
"Indonesia has said it was unfair for foreign drug firms to use samples, design vaccines, patent them and sell the product back to the country. ...
Menno de Jong of the Oxford University Clinical Research Unit in Vietnam's Ho Chi Minh City said sharing viruses and clinical data was vital to improve diagnostics, clinical care and vaccine development, but sharing vaccines was vital too.
'I think the point is well taken from the Indonesia experience that there should be some guarantees for countries affected by H5N1 that they will also share in the vaccines produced,' he said."
Biotech and pharmaceutical companies spend BIG money to produce tests, treatments, and vaccines for a huge range of conditions, from the life-threatening to the merely inconvenient or uncomfortable. And they’re understandably concerned about protecting their investments.
But afflicted patients are usually not compensated for the samples that make these medical miracles possible. (For a good discussion of the problem, read this editorial from the New York Times).
Check out Bryan’s blog entry ((“Patenting human genes”), and then vote in our poll.
Tell us what you think: Does Indonesia’s insistence that compensation (in the form of access to resulting vaccines) for H5N1 avian influenza samples make you feel safer/better?
A recent study in Poland showed that a flu shot can significantly reduce the risk of death for people with coronary artery disease. Dr. Arnold Monto, professor of epidemiology at the University of Michigan, said,
"We know that people die of flu who have underlying cardiopulmonary disease. It's only logical that if you are able to prevent flu with vaccine, you can prevent these deaths."
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New cure: Could a new paint made with a spikey-shaped polymer be a new way to fight the flu? Scientists think they've found a paint that can kill flu bugs on contact.Can you add a paintbrush as a method of fighting the flu along with chicken soup and antibiotics?
Scientists are debating that topic this week after researchers contend they’ve found a polymer-based paint that can kill flu-bearing viruses on touch. The new findings were reported on Scientific American’s website.
The researchers from the Massachusetts Institute of Technology say that the paint can be applied to surfaces in public places such as hospitals, schools or airplanes, where people congregate and can possibly pass along flu germs.
Through the tests, researchers have found that the spiky-shaped polymers when painted on surfaces can kill bacteria, including esherichia coli and Staphylococcus aureus -- bugs that are waiting to jump on to people’s unsuspecting hands, get into bodies and become full-born flu.
These pokey-polymers work by punching holes into the cell wall of a flu bug microbe, letting its contents spill out. The polymer molecules are positively charged, keeping them standing rigid and in position to burst more microbes. That ongoing battle neutralizes flu because those microbes have a wall around them that is susceptible to being speared.
The paint coatings were found non-toxic to monkey cells through tests, but they will need further study before getting government approval to be made commercially available.
Skeptics, however, think that the new information is just another piece in the puzzle of people looking to profit from the latest flu hysteria. They point to new efforts by people pointing to “improved” handwashes and new devices that remind you to wash your hands regularly.
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Shots, they could be a thing of the past!: Courtesy Centers for Disease Control and Prevention
The National Institute of Health is assisting researchers in developing another option for receiving vaccines-a patch. Early patch tests have been developed to ward off flu as well as prevent travelers’ diarrhea. Results have been positive. Further investigation and testing is required to prove patch effectiveness.
The CDC has more than 100 million doses of this year's flu vaccine available--enough so that anyone who wants one can get one. (Doctors and clinics will start receiving the vaccine next month.)
Last year 86 million doses were available, but 4.8 million went unused. Yet 200 million Americans are either considered high risk themselves or have close contact with someone at high risk and should consider getting the shot.
People on the CDC's priority list include:
It's best to get vaccinated in October or November so there's time for immunity to develop before the flu season hits. But numbers of influenza cases usually peak in February, so even a late shot offers some protection.
Every year somewhere between 5 and 20% of the US population catches influenza. 200,000 of them need hospital care, and 36,000 die.
So...will you be getting a flu shot this year? Vote in our poll, and tell us why or why not.

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